Research Interests

We are ecologists and evolutionary biologists who aim to better understand how the natural world works.  Just like all scientists, we seek to characterize patterns and to determine the underlying processes (a.k.a. mechanisms) that create, modify, or maintain those patterns.  Our attention is especially drawn toward the hierarchical levels of biological organization from organisms - through populations and communities - to ecosystems, including the global biosphere.  We primarily research phenomena that intrigue us as naturalists and natural historians, or that concern us as conservation biologists, environmentalists, and engaged global citizens.


Groundcover Diversity & Dynamics in Longleaf Pine Ecosystems of the Subtropical Southeastern United States of America

Balduina uniflora flowerBalduina uniflora (Asteraceae)Abita Springs, Louisiana, USA

Prescribed fire at Camp Whispering PinesPrescribed fire — Camp Whispering Pines, Louisiana, USA; photo © C. E. T. Paine

Sampling quadrat with Sarracenia alata at Abita SpringsQuadrat with Sarracenia alata (Sarraceniaceae) — Abita Springs, Louisiana, USA

Remnant and restored longleaf pine (Pinus palustris [Pinaceae]) ecosystems of the southeastern United States often support extreme levels of groundcover biodiversity.  We are contributing toward the overall mechanistic understanding of these extraordinary communities through long-term observations and experiments on private and public lands in Florida (e.g., Eglin Air Force Base) and Louisiana (e.g., Camp Whispering Pines Girl Scout Camp and The Nature Conservancy's preserves at Abita Springs & Lake Ramsay).

Our basic-science research on community assembly helps contextualize and quantify the roles of dispersal limitation, frequent fire, and species interactions in the high-diversity groundcover (e.g., Gagnon et al. 2012; Harms et al. 2017; Myers & Harms 2009, 2011).  In addition, we found that the bunchgrasses that physically dominate the groundcover tend to be over-dispersed – a spatial-patterning key to understanding these high-diversity communities (Hovanes et al. 2018).

Our fire-ecology research implicates soil heating as a principal driver of groundcover assembly.  The results also suggest that extreme flammability of above-ground organs in many plants from fire-prone ecosystems may be an adaptive mechanism to help protect underground regenerative tissue from lethal heating during fires (e.g., Gagnon et al. 2010, 2015).

We also capitalize on opportunities to apply and translate our science toward conservation and restoration in longleaf ecosystems, especially through educational and management-based outreach.  For example, see my essay for The Longleaf Alliance's quarterly magazine, The Longleaf Leader (Harms 2019); also see our workshop report with recommendations to the Partnership Council of America's Longleaf Restoration Initiative (Groundcover Working Group 2015).

View photos of some of our high-diversity groundcover plants in these albums:

Also view my photos posted to iNaturalist (many of which are plants from high-diversity groundcover sites):

We thank Eglin Air Force Base (specifically Jackson Guard), the Girl Scouts of America, the National Science Foundation (grants DEB #0516175, DEB #114408), and The Nature Conservancy for supporting our projects.


Forest Diversity & Dynamics in Far North Queensland's Wet Tropics, Australia

Joe Connell in AustraliaJoseph H. Connell — Far North Queensland, Australia; photo © P. T. Green

Connell's Davies Creek plot's 50th anniversary census50th anniversary census of Connell's tropical plot — Davies Creek, Queensland, Australia; photo © P. T. Green

During a decades-long, highly productive career, our inspirational mentor and friend, Joe Connell (1923-2020; see Sousa et al. 2021), established long-term research projects in Australian forests (e.g., Connell et al. 2005) and on the Great Barrier Reef (e.g., Connell et al. 2004), among others.  Joe initiated his forest dynamics project at sites in tropical (Davies Creek National Park) and subtropical (Lamington National Park) Queensland, Australia in 1963.  Pete Green (La Trobe University, Melbourne, Australia) inherited the project and in 2013 we conducted the 50th anniversary census of the trees in Connell's plots (Harms & Green 2014). 

Using the Davies Creek (Queensland Wet Tropics) demographic data, we found empirical support for the long-standing idea in forest ecology that early-stage (e.g., seed and seedling) dynamics are especially consequential to forest composition and diversity (Green, Harms & Connell 2014).  These observations motivated us to develop conceptual models and mechanistic hypotheses concerning disproportionate non-random mortality among life-cycle stages in all types of communities (Green & Harms 2018).

In a first step toward better understanding the microbial influence on recruitment at Davies Creek, Jen Wood selectively sampled microbial assemblages in Connell's plot, and found compositional structure associated with non-random, diversifying seedling dynamics (Wood et al. 2020).


Global Patterns of Neighborhood Dependence:  Influences of Neighbor Density, Distance & Phylogenetic Relatedness on Demographic Performance of Individual Trees & Lianas

Unattacked Tetragastris panamensis seedlingUnattacked Tetragastris panamensis (Burseraceae) seedling — BCI, Panama

Attacked Tetragastris panamensis seedlingAttacked Tetragastris panamensis (Burseraceae) seedling — BCI, Panama

Pit-galling homopteransPit-galling homopterans — BCI, Panama

Stemming from their stay-at-home lifestyles, plants tend to interact primarily with their near neighbors.  Accordingly, neighborhood interactions have the potential to shape community assembly (e.g., maintain diversity, organize patterns of alpha- and beta-diversity, etc.).  Our analyses of spatially detailed demographic records – especially for woody species in mapped forests – clearly indicate that non-random, neighborhood-scale, inter-individual interactions often influence individual-level performance (growth, mortality, recruitment). 

Among other patterns, we have found: 

(1) Negative density-dependent seed-to-seedling recruitment among common species of trees and lianas in the Center for Tropical Forest Science (CTFS – a research branch of the Smithsonian Tropical Research Institute [STRI]; now ForestGEO) 50-ha Forest Dynamics Plot (FDP) on Barro Colorado Island (BCI, i.e., the Hubbell-Foster FDP), Republic of Panama (consistent with the Janzen-Connell Hypothesis for the maintenance of species diversity; Harms et al. 2000).

(2) Density- and distance-dependent survival of seedlings and small saplings of a common canopy tree species on BCI (Gilbert et al. 2001).

(3) Reduced survival among established trees in conspecific-rich neighborhoods (with relatively consistent patterns among 5 CTFS FDPs in Asia and 2 in the Neotropics; Wills et al. 2006).

(4) Between-seedling distances too large for competition among conspecific seedlings to play a substantial role in early-stage, non-random seedling mortality at Cocha Cashu Biological Station, Peru (Paine et al. 2008).

(5) Neighborhood influences on individual performance of saplings and established trees taper off with phylogenetic distance separating the focal stem from its neighbors (Wills et al. 2016; based on our novel, randomization-based Equal-Area Annulus statistical method applied to CTFS FDPs at BCI and Sinharaja, Sri Lanka).

Several other research groups are adding to our understanding of these phenomena with detailed work on the mechanisms (e.g., fungal pathogen infection, herbivory, vertebrate seed predation) causing these patterns.  (See also Jen Wood's work on microbial assemblages in Connell's Davies Creek plot in the previous section on this webpage.)  My own observations suggest that a key culprit causing non-random (possibly both density- and distance-dependent) early-stage mortality in Tetragastris panamensis (Burseraceae) – one of the most common canopy trees on the BCI FDP – is a somewhat host-specific pit-galling homopteran that appears to "rain" down from conspecific adult canopies; this is one of the key mechanisms Janzen imagined when he proposed his version of the Janzen-Connell Hypothesis.


Soil-Borne Resources Shape Diversity, Dynamics & Structure of Forests Worldwide

Soils chemical extractions in Manaus, Brazil soils labSoil chemical extractions — INPA Soils Lab, Manaus, Brazil

BCI topographic map with 2 species' distributionsBCI, Panama 50-ha Hubbell-Foster CTFS plot topography (longer wavelength colors = lower elevations); together with two species' spatial distributions (blue dots = Ocotea whitei [Lauraceae; positively associated with the eastern and southern slopes];  red dots = Elaeis oleifera [Arecaceae; positively associated with the swamp]) 

Plant distribution patterns are often biased with respect to environmental variables (e.g., soil chemistry, moisture) or landscape features (e.g., topography).  The nature of the biases, especially the extent to which they differ among speices and their underlying causes, helps sort among alternative mechanisms for the maintenance of species diversity and other emergent properties of community assembly. 

Collaborators and I have found distributional biases in several of the Center for Tropical Forect Science (CTFS – a research branch of the Smithsonian Tropical Research Institute [STRI]; now ForestGEO) Forest Dynamics Plots (FDPs).  To assess patterns of association between mapped stems and delineated habitats, I developed the Torus-Translation Test (a randomization-based statistical method), which we introduced using data from the Barro Colorado Island (BCI), Republic of Panama FDP (Harms et al. 2001).  Collaborators and I also found distributional biases with repsect to topography in the Korup, Cameroon FDP (Chuyong et al. 2011) and the Sinharaja, Sri Lanka FDP (Gunatilleke et al. 2006).  In similar studies, we found biased distributions with repsect to soil types among lianas in Sabah, Malaysia (DeWalt et al. 2006) and with respect to soil and topographic variables among trees in the Brazilian Amazon (Laurance et al. 2010). 

To better understand the underlying processes that generate spatial patterns of tropical tree and liana distribution, diversity, and dynamics, Jim Dalling (University of Illinois), Robert John-Chandran (Indian Institute of Science Education & Research), Joe Yavitt (Cornell University), Bob Stallard (U. S. Geological Survey), and I systematically characterized soil properties and hydrology of selected CTFS FDPs.  Our soil project stimulated similar assessments by other research groups in many of the temperate and tropical CTFS FDPs.  Soil-chemical and hydrologic spatial patterns help explain many individual species' distributional patterns and assemblage-level compositional patterns in forests throughout the world (e.g., Baldeck et al. 2013a, b, c, 2016 [trees at BCI and 7 other African, Asian & Neotropical FDPs]; Dalling et al. 2012 [lianas at BCI]; John et al. 2007 [trees at BCI and 2 other Neotropical FDPs]). 

We thank the National Science Foundation (grants DEB #0211004, OISE #0314581) and the Smithsonian Tropical Research Institute for supporting our initial soil and hydrology collaborative effort, including our soil-sampling, soil-analysis, and data-analysis training workshops in Panama, which expanded sampling and assessments to additional sites within the CTFS network and beyond.


Nutrient Cycling & Limitation in a Lowland Tropical Forest on the Isthmus of Panama

Gigante Peninsula field site, PanamaGigante Peninsula Forest Fertilization Experiment, Panama

Frog on rain shelterRain-shelter denizen

"Green" and "brown" food webs in Panama forest"Green" & "brown" food webs — Gigante Peninsula, Panama

To test a variety of predictions concerning nutrient cycling and limitation within both the "green" and "brown" food webs of lowland tropical forests, we have been adding nutrients to 40 x 40-m plots of relatively old-growth forest on the Gigante Peninsula of the Barro Colorado Nature Monument of the Smithsonian Tropical Research Institute (STRI), Republic of Panama since 1998 (NPK-factorial, plus separate micronutrient experimental design; e.g., Santiago et al. 2012; Sayer et al. 2012; Turner et al. 2013, 2015; Woods et al. 2018Wright et al. 2011; Yavitt et al. 2009, 2011). 

Key results from the experiment support the growing awareness of multi-nutrient limitation of ecosystem processes (e.g., decomposition; Kaspari et al. 2008) and the limited responsiveness of net primary production to nutrient additions in tropical old-growth forests (at least over several years to a few decades, i.e., short time scales relative to tree lifetimes; Wright et al. 2018).

Joe Wright (Smithsonian Tropical Research Institute), Joe Yavitt (Cornell University), and I conceived the idea and designed the project; then together with Milton García we initiated fieldwork in 1997 (to determine baseline conditions prior to nutrient amendments).  Several ecologists, ecophysiologists, and biogeochemists have used our experiment as a springboard from which to further advance our understanding of nutrient cycling and limitation in tropical forests, including:  Mike Kaspari (University of Oklahoma); Jennifer Powers (University of Minnesota); Lou Santiago (University of California at Riverside); Emma Sayer (Lancaster University); Ben Turner (Smithsonian Tropical Research Institute); etc.  We thank the Smithsonian Institution and the Smithsonian Tropical Research Institute for supporting this project.


Diversity & Dynamics in Intact & Fragmented Tropical Forests of Central Amazonian Brazil

Ale Oliveira in BrazilAle Oliveira identifying a leaf — Brazilian CTFS plot

New species of shrub on Manaus CTFS plotNew species of shrub — Brazilian CTFS plot

First census of CTFS Manaus plotFirst census — Brazilian CTFS plot

Alexandre "Ale" Adalardo de Oliveira (Universidade de São Paulo, Brazil) and I spear-headed an effort to better understand forest diversity and dynamics in intact forests of the central Amazon Basin by adding a new node (near Manaus, Brazil) to the network of Forest Dynamics Plots (FDPs) coordinated by the Center for Tropical Forest Science (CTFS – a research branch of the Smithsonian Tropical Research Institute [STRI]; now ForestGEO).  We set up a 49-ha FDP in which all free-standing woody stems ≥ 1-cm diameter are mapped, measured, identified to species (of which there are more than 1000), and uniquely tagged for future re-measurements.  Alberto "Beto" Vicentini (Instituto Nacional de Pesquisas da Amazônia) and Ale are now managing and overseeing the project.  Stand data from the plot are being used in a variety of global comparisons among forests (e.g., Réjou-Méchain et al. 2014).  We thank the Brazilian Government, CTFS, the Louisiana Board of Regents, and the Richard & Rhoda Goldman Fund for supporting our project.

Visit the Smithsonian Institution's Forest Global Earth Observatories (ForestGEO) web page of our Manaus FDP for a few additional details.

Keep abreast of ForestGEO developments through the ForestGEO blog and via the ForestGEO photostream at Flickr.

In a separate, but coordinated endeavor, I collaborated with Bill & Sue Laurance (James Cook University, Cairns, Australia) and the Biological Dynamics of Forest Fragments Project (BDFFP) in Brazil to better understand changes that occur in Amazonian forests once they have become fragmented (e.g., Laurance et al. 2006).  With funding from the National Science Foundation (grant DEB #0614044), we conducted the first comprehensive census of sapling recruits (1 to 10-cm diameter) in subplots within the 1-ha phytodemographics plots that are strategically located in fragments and associated continuous forests across the BDFFP landscape.


Adaptive Evolution & Ecological Consequences of Plant Traits

Mora seedSeed of Mora excelsa (Fabaceae) — Suriname

Hibiscus flowerFlower of Hibiscus aculeatus (Malvaceae) — Louisiana, USA

Unusual organismal traits beg for ultimate explanations, i.e., why (in an evolutionary sense) do they exist?  Such explanations require understanding the ecological consequences of the traits for the organisms that possess them.  In the first section on this webpage, I gave the example of plants with highly flammable tissues that thrive in fire-frequented ecosystems.  In subsequent sections, I give two further examples:  "trash basket" architecture for nutrient acquisition in a tropical montane treelet and water calyces for floral defense in a tropical lowland herbaceous plant.

My earliest contributions - with Jim Dalling (University of Illinois) - toward better understanding adaptive traits in plants concerned the importance of resprouting to the recruitment ecology and life-history evolution of large-seeded trees and lianas (e.g., Dalling et al. 1997; Dalling & Harms 1999; Harms et al. 1997; Harms & Dalling 1997).  In the process of working with big seeds, I discovered a new species of clearwing moth (Carmenta foraseminis [Sesiidae]), whose larvae tunnel through the large seeds of Gustavia superba (Lecythidaceae; Harms & Aiello 1995). 

Many adaptive plant traits influence the animals with which they interact.  Seed dispersal, herbivory, pollination, etc. are all shaped by adaptive evolution, sometimes co-evolution (reciprocal adaptive evolution of each partner in response to adaptations in the other), as well as learning and cultural transmission among the animal interactors.  I recently became interested in the extent to which contrasting pollen on petals in some plants might influence the behavior of potential pollinators (Harms 2020).

Collaborators and I have also explored several relationships among the functional, morphological, and physiological traits of plants, as well as their demographic characteristics (e.g., Poorter et al. 2008; I. J. Wright et al. 2007; S. J. Wright et al. 2010).


"Trash Basket" Trade-off:  Light- vs. Nutrient-Capture in Quadrella antonensis (Capparaceae)

Quadrella antonensis branch

Quadrella antonensis (Capparaceae) "trash basket" — Cerro Campana, Panama

Cerro Campana, PanamaAltos de Campana National Park, Panama

Quadrella antonensis plant

Quadrella antonensis (Capparaceae) — Cerro Campana, Panama

Quadrella antonensis (formerly Capparis antonensis [Capparaceae]) is an unusual montane cloudforest treelet, endemic to the Republic of Panama.  At our study site in Altos de Campana National Park, individuals sacrifice light-capture efficiency to obtain nutrients through aboveground adventitious roots that access decomposing leaf litter held in the "trash baskets" formed from the plant's own closely-spaced leaves (Harms, Dalling & Sánchez de Stapf 2020 - a Flora Obscura contribution to The New Phytologist Trust's Plants, People, Planet; enjoy the brief YouTube video summary) .  In our article we compare and contrast litter trapping with botanical carnivory and certain types of myrmecophily as alternative nutrient-acquisition strategies.  Jim Dalling (University of Illinois) and I worked on the basic litter-trapping biology; María Sánchez de Stapf (Universidad de Panamá) collaborated with us and completed a master's thesis by conducting a litter-removal experiment (which empirically demonstrated the performance advantage to these plants of trapping litter); and Bob Pearcy (University of California at Davis) contributed toward understanding nutrient uptake.  We thank the Smithsonian Tropical Research Institute for supporting this project.


Water Calyces Dissuade Specialist Floral Enemies in Chrysothemis friedrichsthaliana (Gesneriaceae)

Chrysothemis friedrichsthaliana in bloomChrysothemis friedrichsthaliana (Gesneriaceae) — BCI, Panama; photo © G. Dimijian

Alucita sp. cf. flavicinctaAlucita sp. cf. flavicincta (Alucitidae) — Osa Peninsula, Costa Rica; photo © J. E. Carlson

Chrysothemis friedrichsthaliana (Gesneriaceae) develops "water calyces," i.e., upright calyces that fill with water which covers the additional floral structures during their early development.  Jane Carlson's experiments on the Osa Peninsula of Costa Rica demonstrated that flowers with artificially drained calyces suffered higher rates of attack by a microlepidopteran floral herbivore (Alucita sp. cf. flavicincta [Alucitidae]), supporting the adaptive hypothesis that water calyces dissuade specialist floral enemies (Carlson & Harms 2007).


Behavioral Ecology

Guanacos in Torres del Paine, ChileGuanacos (Lama guanicoe) — Torres del Paine, Chile

Yellow-headed blackbirdYellow-headed blackbird (Xanthocephalus xanthocephalus) — Columbia National Wildlife Refuge, Washington, USA

Monk parakeet in ArgentinaJ. Eberhard & monk parakeet (Myiopsitta monachus) — Entre Ríos, Argentina

Even though most of my current research has a plant-ecology focus, I have an abiding interest in behavioral ecology.  Natural history has aroused my curiosity and sense of wonder for as long as I can remember, but as an undergraduate I was especially intrigued by animal behavior.  For example, I was a field assistant to Bill Franklin and Warren Johnson (who were then professor and Ph.D. student, respectively, at Iowa State University) in Torres del Paine National Park, Chile – where I helped study the foraging and social behavior, as well as inter-specific interactions, of some of the park's carnivores (puma [Puma concolor]; two species of fox [Lycalopex culpaeus; L. griseus]; Geoffroy's cat [Leopardus geoffroyi]; and Patagonian hog-nosed skunk [Conepatus humboldtii]).  I also completed a 7-month investigation of sex-biased juvenile dispersal in guanacos (Lama guanicoe).  Then, just before graduate school, I was a field assistant to Gordon Orians and Les Beletsky (who were then professor and post-doc, respectively, at the University of Washington) on a long-term study of the courtship, mating, nesting, and parental behavior of three species of New World blackbirds (red-winged blackbird [Agelaius phoeniceus]; Brewer's blackbird [Euphagus cyanocephalus]; and yellow-headed blackbird [Xanthocephalus xanthocephalus]) in eastern Washington (Harms et al. 1991).

Considerably more recently, Adriana Bravo's experiments and observations at the Los Amigos Biological Station in lowland Peru supported our hypothesis that frugivorous stenodermatine bats (a subfamily of New World leaf-nosed bats) visit collpas (clay licks) to obtain sodium that is otherwise in short supply in their diets (Bravo et al. 2008, 2010a, 2010b, 2012).  Adriana's project expanded into an investigation of the biogeography of sodium availability in the Neotropics (Bravo & Harms 2017).

Sandra Galeano's experiments and observations in the Bocas del Toro Archipelago, Republic of Panama supported our prediction that males from aposematic, brightly-colored populations of the highly polymorphic / polytypic frog, Oophaga pumilio, would be more aggressive toward both conspecific and heterospecific males than would be individuals from cryptic populations (Galeano & Harms 2016).  Sandra's project helps link the evolution of behavioral and morphological traits in O. pumilio via natural and sexual selection to their community-level contexts and consequences.

I am grateful to the students, post-docs, professors, and other friends who have helped me nurture a wide range of interests!